Rooted phylogenetic networks are primarily used to represent conflicting evolutionary information and describe the reticulate evolutionary events in phylogeny. So far a lot of methods have been presented for constructing rooted phylogenetic networks, of which the methods based on the incompatible graph (the LNETWORK and the BIMLR) are more efficient than other available methods. IGNet is an online tool which constructs rooted phylogenetic networks. It contains two methods LNETWORK and BIMLR.
    PubMed Link:
       LNetwork: An Efficient and Effective Method for Constructing Phylogenetic Networks
        (Link:http://www.ncbi.nlm.nih.gov/pubmed/23811095
       BIMLR: a method for constructing rooted phylogenetic networks from rooted phylogenetic trees
        (Link:http://www.ncbi.nlm.nih.gov/pubmed/23816409
computer science & technology,inner mongolia university
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